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Attwood T.K., Parry-Smith D.J. Ч Introduction to bioinformatics
Attwood T.K., Parry-Smith D.J. Ч Introduction to bioinformatics

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Ќазвание: Introduction to bioinformatics

јвторы: Attwood T.K., Parry-Smith D.J.

јннотаци€:

The book provides an undergraduate (final year) introduction to bioinformatics focussing on two key areas, genomics and protein sequence analysis. It provides an overview of primary, composite and secondary databases, and gives a brief introduction to the Internet and the world wide web.


язык: en

–убрика: Computer science/Ѕиоинформатика/

—татус предметного указател€: √отов указатель с номерами страниц

ed2k: ed2k stats

√од издани€: 1999

 оличество страниц: 218

ƒобавлена в каталог: 09.11.2005

ќперации: ѕоложить на полку | —копировать ссылку дл€ форума | —копировать ID
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ѕредметный указатель
$\alpha$-Lactalbumin      xiiЧxiii
$\beta$-barrel      xii 9 12 64 209
Adrenergic recepter      138Ч140
Algorithm      109Ч110 119Ч131 134 154 199
Alignment, absolute position      133Ч134
Alignment, automatic      60 136Ч141 194
Alignment, colour      135Ч136 147 194Ч195
Alignment, format      137Ч138
Alignment, global      119Ч122
Alignment, local      53 56 119 122Ч124 126
Alignment, manual      132 135Ч136 194Ч195
Alignment, multiple      46Ч49 53 58 88 132Ч143 155 160 175 194Ч197 205
Alignment, Needleman and Wunsch      104 119Ч122
Alignment, optimal      110 125 135
Alignment, pairwise      108Ч131 134 137 142
Alignment, parameters      60 88 110 115 119 124Ч126 158
Alignment, progressive      136Ч137
Alignment, progressive, Clustal      136Ч138 193Ч194
Alignment, pseudo-sequence      134 201
Alignment, relative position      133Ч134
Alignment, seed      60 140 160
Alignment, simultaneous      136
Alignment, Smith and Waterman      122Ч124
Alignment, widow      140 194 210
Alphabet, amino acid      7 109Ч110
Alphabet, complexity      109Ч110 115
Alphabet, EST      89 109
Alphabet, hydropathy      187
Alphabet, nucleic acid      59 109
Alternatively spliced form      see УSplice variantsФ
Amino acids      1 199
Amino acids, physicochemical properties      42 61 112Ч113 136 150 187
Amphipathic helices      185Ч186 188 199
Analogue      12 199
ANGIS      27 32 34
Annotation, error      xix
Basepair      94 199
Binding site      51Ч53 87
Bioinformatics      2Ч3 6 8 23 25Ч28 163 165 200
Biological significance      50 77 111 146
Catalytic triad      12
Central dogma      84 200
Chaperone      10 200
Chromosome      94 200
Chymotrypsin      12
Client      21 75 200
Clone      6 78 85 87Ч88 95Ч96 200
Cloning, vector      88 98 200
Coding sequence (CDS)      82Ч85 87 89 92 95 98 100 200
Codon, start      82 85 206
Codon, stop      82 84Ч86 206
Codon, third base wobble      86
Codon, usage      85Ч87
Collagen      128
command line      190 200
Common object request broker architecture (CORBA)      65 193
Communication protocol, File Transfer Protocol (FTP)      21 202
Communication protocol, Hypertext Transport Protocol (HTTP)      24 204
Communication protocol, Internet Inter-ORB Protocol (HOP)      193 204
Communication protocol, Telnet protocol      21 209
Communication protocol, Transmission Control Protocol/Internet Protocol (TCP/IP)      19 209
Complexity, alphabet      109Ч110 115
Complexity, computational      134Ч135
Conceptual translation      37 83Ч85 94 201
Conserved, motif      36 46Ч49 53Ч58 61 146Ч155 169 179 183 195Ч196
Conserved, residue      xii 52 135 158 160 175 177 179
Conserved, sequence      7 56 201
Conserved, structure      xiii 12 16 160 183
Contig.      98 191Ч192 199 201
Cyclooxygenase (COX)      72Ч74 103Ч106
Dansylation      2 201
Database format, accession (AC) number      38Ч40 49 53 55Ч57 60 72Ч75 126Ч129 174 199
Database format, crosslink      54Ч55
Database format, FASTA      72 137 171
Database format, feature table      40 72Ч74
Database format, identifier, GSDBID      75Ч76
Database format, identifier, ID      38 49 51 54Ч56 59Ч60 126 166Ч167
Database format, identifier, NID      74
Database format, identifier, PID      74
Database format, keywords      40 72Ч74
Database searching, ACEDB      78Ч79
Database searching, BLAST      100 116 119 126Ч131 167Ч169
Database searching, FASTA      38 125Ч127 167
Database searching, probe      101 108 207
Database searching, protocol      163Ч184
Database searching, PSI-BLAST      142Ч143
Database searching, subject      108 209
Database searching, text query      104 108
Databases, ACeDB      78
Databases, ATCC      98
Databases, bibliographic      29Ч31
Databases, BLOCKS      46Ч47 56Ч58 68 150 154 174 176Ч177
Databases, boutique      29 75
Databases, CATH      29 64 68 180Ч181
Databases, composite      43Ч45 62 200
Databases, DDBJ      28 31 37 68Ч70 80
Databases, dhEST      74 80 96Ч97
Databases, EGAD      98
Databases, EMBL      28 31 37 41 45 68Ч70 80
Databases, flat-file      29 36 41 75 202
Databases, fold templates      8 163
Databases, GenBank      28 31 43Ч45 68Ч74 80
Databases, GenBank, divisions      70 98 145
Databases, GenPept      43Ч45 72
Databases, GSDB      75Ч76 80
Databases, IDENTIFY      46Ч47 61 68 174 178
Databases, LifeSeq      96
Databases, MEDLINE      42 70 72 74
Databases, MIPS      37Ч38 44Ч45 68
Databases, MIPSX      44Ч45
Databases, non-identical      43 200
Databases, non-redundant      3 43Ч45 200
Databases, NRDB      43Ч44 167 200
Databases, NRL-3D      37 41Ч44 68
Databases, object-oriented      36 193 206
Databases, OWL      44Ч46 68 165Ч168 200
Databases, pattern      8 29 45Ч62 140 160 163Ч164 206
Databases, PDB      3 29 41Ч44 65 180Ч182
Databases, PDBsum      29 31 68 181Ч182
Databases, Pfam      46Ч47 59Ч62 68 138Ч140 160 171
Databases, PIR      31 37Ч38 43Ч44 68
Databases, primary      36Ч45 50 74Ч75 145 154 164Ч169 206
Databases, PRINTS      29 46Ч47 53Ч58 61Ч62 68 140Ч141 150Ч152 156 171Ч174 179Ч183 209
Databases, PRO SITE      40 46Ч53 56Ч62 68 149 158Ч160 169Ч171 174 179Ч183 209
Databases, REBASE      189
databases, relational      36 75 207
Databases, SBASE      26
Databases, SCOP      63Ч64 68 180
Databases, secondary      36 45Ч62 137 140 145Ч161 163 169Ч179 208
Databases, sequence      4Ч5 13 26 29 36Ч45 69Ч75 82 100 163
Databases, SGD      75 77 80
Databases, SMART      160
databases, structure      29 36 62Ч65 163 180Ч182
Databases, SWISS-PROT      28 31 37Ч41 43Ч46 49 53 57 60 68 126Ч128 137
Databases, TDB      77 80
Databases, tertiary      55Ч56 61 209
Databases, TFD      189
Databases, TrEMBL      37Ч38 41 44Ч45
Databases, TrEMBL, REM-TrEMBL      41
Databases, TrEMBL, SP-TrEMBL      41 53
Databases, UniGene      77 80
Deletion      91 123 158 160 204
Dendrogram      83
Deoxyribonucleic acid (DNA)      2 84Ч85 201
Deoxyribonucleic acid (DNA), complementary (cDNA)      82Ч85 95Ч96 98 200
Deoxyribonucleic acid (DNA), GC-rich      89Ч90
Deoxyribonucleic acid (DNA), secondary structure      89Ч90
Deoxyribonucleic acid (DNA), sequence analysis      81Ч107
Dideoxynucleotide      88
Discriminator      51 56 58Ч59 201
Documentation      49 52Ч53 57 59 62 179
Dopamine receptor      138 140
Dotplot      116Ч117 119
Dotted-decimal format      20
Down      19 201
Drug discovery      93 103
Drug target      93 96 104
Dumb display      22 201
Dynamic programming      104 125Ч126 130 135Ч137
Dystrophin      205
EBI      26Ч28 34 38 45 69 70
Edit distance      110
Edman degradation      2 202
EMBnet      25Ч30 34
Entrez      31 34 72
enzyme      1 202
Enzyme, classification (EC) system      64 201Ч202
Eukaryote      87 202
Evolution, common ancestor      12 64 83 204
Evolution, convergent      xiЧxii 12 83 199
Evolution, divergent      xiЧxii 12 83 139 150 158 204
Exon      78 82 84 87 92 94 202
Expressed Sequence Tag (EST)      3 70Ч74 76 89Ч93 96Ч106 109 202
Expressed Sequence Tag (EST), assembly      98 100Ч101
Expressed Sequence Tag (EST), clustering      85 100Ч102
Expressed Sequence Tag (EST), similarity      85 100 105
Expression profile      94Ч97 202
FHCRC      56Ч57
FireWall      189 202
Folding problem      8Ч10 202
Frameshift      89 91 166 202Ч203
Functional site      xi 8 49Ч52 63 119 149 155 164 208
G-protein-coupled recepters (GPCRs)      40 137Ч141 154 156
gaps      6 110Ч111 115 133 137Ч140 194 210
Gene      4 203
Gene, cloning      2 87 200
Gene, cluster      77
Gene, discovery      77 93
Gene, duplication      13 203
Gene, expression      77 95Ч96 98 203
Gene, family      103 106 108Ч109 132 137 141Ч142 146 203
Gene, identification      93
Gene, locus      93 205
Gene, mapping      77
Gene, product      74Ч75 87 97 203
Gene, structure      78 82Ч85
Gene, testing      4
genetic code      81Ч83 85 203
Genetic code, degeneracy      81 203
Genome      203
Genome Annotation Consortium (GAC)      4
Genome projects      xii 4Ч6 41 71Ч72 94 203
Genome projects, A. thaliana      5 29 78
Genome projects, C. elegans      5 78
Genome projects, eukaryotic      5 77
Genome projects, human      4Ч6 28 78 100
Genome projects, human, finished sequence      6
Genome projects, human, rough draft      6
Genome projects, mouse      5 28
Genome projects, prokaryotic      5
Genome projects, S. cerevisiae      5 29 78
Genome, analysis      xi 3
Genome, chromosomal      94
Genome, data      xiii
Genome, expressed      94Ч96
Genomic sequence      71 82 100
Genomic sequence, Sequence Tag Site (STS)      70Ч72 208
Haemoglobin      7
Helical periodicity      188
Helical wheel      185Ч186 188 203
Heuristics      119 135 137
HGMP-RC      26Ч28 34
High-scoring pairs (HSPs)      125Ч126 128
Holy grail      8
Homology      12 15 47 64 108 142 146 204
Human Gene Index (HGI)      97Ч99
Human transcript (HT)      98
Hybridisation      204
Hybridise      88
Hydropathy      11 185Ч188 204
Hydropathy, profile      185Ч188 204
Hydrophobicity      9 42 136 149 185Ч188 199 203Ч204
Indel      58 158Ч159 204
INDEL, phantom      89 91 206
Information deficit      3
Information deficit, sequence/structure      3 6 35
Information retrieval, ATLAS      42
Information retrieval, Entrez      31 72 34
Information retrieval, Sequence Retrieval System (SRS)      26 29Ч30 34
insertion      46 111 119Ч121 137Ч141 147 158 160 170
Insulin      1
Internet      19Ч21 204
Internet Protocol (IP) Address      19Ч20 204
Internet, domain name      20
Internet, packages      194Ч197
Internet, World Wide Web (WWW)      21 210
Intranet      204
Intranet, packages      193Ч194
Intron      82 84 87 204
ISREC      58Ч59 170
Java      23 65 193Ч194 197 204
Java, applet      22 194 199
k-tuple      125
Kilobase      71 205
Kozak sequence      85
Language      6Ч7 10
Latrotoxin receptor      205
Library, cDNA      85 95Ч96 98 200
Library, EST      101Ч102
Library, normalised      96 205
Low-complexity regions      128 142 145
Lysozyme      xiiЧxiii
Matrix      59 116
Matrix, 2D      119Ч125 134 136Ч137
Matrix, BLOSUM      112 114Ч115 126 154
Matrix, cells      116 119Ч120 122Ч123
Matrix, Dayhoff Mutation Data (MD)      112Ч114
Matrix, frequency      48 151Ч153 156
Matrix, identity      120
Matrix, log odds      113
Matrix, mutation      151
Matrix, PAM      113Ч115 153Ч154
Matrix, PSSM      134 154 175
Matrix, similarity      118
Matrix, sparse      111 118 151Ч153 208
Matrix, substitution      151
Matrix, unitary      111Ч112 118
Matrix, unweighted      134
Matrix, weighted      46Ч48 58 134 154 210
Megabase      93 205
Merck Gene Index      96
Midnight Zone      11 16 205
mips      27Ч28 34
Model organism      28 38 75 87
Model system      5 69 205
Molecular genetics      4
Motif      xii 7 36 46Ч49 53Ч59 146Ч156 169 173Ч174 183 196 205
Motif, seed      53 55
Mutation      83 113 119 135 151 205
Mutation, silent      83 208
NCBI      27 30Ч31 34
Node      19Ч20
Noise      61 100 111 116Ч118 142 146 148 151 153Ч154
NSAID      103
Nucleotide      2 4 71 74 83 87Ч88 98 205
Octopamine receptor      138 140
Open reading frame (ORF)      82 85Ч86 206
Operating System      22Ч23 206
Opsin      13 39Ч40 51Ч52 54Ч55 57Ч58
Orthologue      12Ч14 146 161 206
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