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Attwood T.K., Parry-Smith D.J. — Introduction to bioinformatics
Attwood T.K., Parry-Smith D.J. — Introduction to bioinformatics



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Íàçâàíèå: Introduction to bioinformatics

Àâòîðû: Attwood T.K., Parry-Smith D.J.

Àííîòàöèÿ:

The book provides an undergraduate (final year) introduction to bioinformatics focussing on two key areas, genomics and protein sequence analysis. It provides an overview of primary, composite and secondary databases, and gives a brief introduction to the Internet and the world wide web.


ßçûê: en

Ðóáðèêà: Computer science/Áèîèíôîðìàòèêà/

Ñòàòóñ ïðåäìåòíîãî óêàçàòåëÿ: Ãîòîâ óêàçàòåëü ñ íîìåðàìè ñòðàíèö

ed2k: ed2k stats

Ãîä èçäàíèÿ: 1999

Êîëè÷åñòâî ñòðàíèö: 218

Äîáàâëåíà â êàòàëîã: 09.11.2005

Îïåðàöèè: Ïîëîæèòü íà ïîëêó | Ñêîïèðîâàòü ññûëêó äëÿ ôîðóìà | Ñêîïèðîâàòü ID
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Ïðåäìåòíûé óêàçàòåëü
Packet      19 206
Paralogue      12—14 161 206
Pattern      7—8 49—50 51—53 59 141—142 160 163—164 175 179 181 183 206
Pattern recognition      7—8 146 158 160 164
Peptide      1 40 74 98 165 167
Peptide, signal      41 74
Phylogenetic analysis      82 83 146 206
Phylogenetic analysis, tree      13 135 137 185 206
Point Accepted Mutation (PAM)      113—115 153—154
Polymerase chain reaction (PCR)      2 87 206
Polymorphism      106
Porins      12
Positional cloning      93
Post-translational modification      2 38 40 133 206
Prediction      7—8 14 40 82 93 95 163—164
Prediction, ab initio      7
Prediction, secondary structure      9—10 185
Prediction, secondary structure, Chou and Fasman      9
Prediction, tertiary      9—10 14
Primer      77 85 87—88 207
PROGRAM      109
Prokaryote      5 82 207
Promoter      78 84 207
Promoter, TATA box      84
Protein      1 207
Protein structure      9
Protein structure, primary      9—10 36 207
Protein structure, quaternary      9 207
Protein structure, quinternary      9 207
Protein structure, R-factor      42 65 207
Protein structure, resolution      42 65 207
Protein structure, secondary      9 36 40 42 63—65 133 158 164 181—183 185 208
Protein structure, subunit      9—10 209
Protein structure, super-secondary      9 209
Protein structure, tertiary      9—10 36 133 209
Protein, architecture      xii 64 149 155 181
Protein, architecture, scaffold      xii 155
Protein, class      64 180—181
Protein, domain      12 14 36 47 59—61 63—64 145—146 160 167 170—171 179—181 201
Protein, domain, transmembrane (TM)      40 52 60 155—156 185 187 196 209
Protein, family      7 13 40 46—63 77 83 103—105 109 137—142 146—156 163—167 174—180 196
Protein, fold      xii 7 36 63—65 155 180—182
Protein, function      xiii 12—14 38—40 47—48 63—64 155 163—164 179
Protein, module      14 15 36 63 205
Protein, module, kringle      205
Protein, module, WW      205
Protein, mosaic      14 205
Protein, superfamily      13 40 64 138—140 146 180
Protein, topology      64 180—181
Proteome      94
Prothrombin      2
Query, language      29 45 75 165
Query, sequence      12—13 47 53 87 92 98—99 125—126 128 148 156 166—178
Reading frame      82 85—87 165 206
Regulatory sequence      195 207
Remote computing      21 31 65 209
Restriction site mapping      78 82 189
Retinal      39 51—53 57
Reverse transcriptase      85 95
Rhodopsin      13 38—40 52 57 60 96 155—156
Ribonuclease      1 9
Ribonucleic acid (RNA)      2 83—84 95 208
Ribonucleic acid (RNA), polyadenylation site      74
Ribonucleic acid (RNA), transcript analysis      93—94
Ribosome binding site      87 107
Rube Goldberg machine      14—15
Sanger Centre      26—28 34 60 78
Score      56 59 110—112 116—128 137 146 151—159 167 173—174 187
Score, standardised      56
Score, strength      56
Scoring, matrices      112—113 115 126 134 175
Scoring, penalties      111 115 119—120 125 137 158—159 206—207
Scoring, sliding window      118 156 187 204
Scoring, threshold      11 50 126 142 156
Sequence analysis methods, block      36 46—48 56—58 114 134 141 154—158 174—177 182—183
Sequence analysis methods, block, logo      174—175 177
Sequence analysis methods, exact matching      61 148 149 151 165
Sequence analysis methods, fingerprint      36 46 48 53—55 57 134 141 151—156 172—173 179
Sequence analysis methods, fingerprint, graph      155—156 173
Sequence analysis methods, full domain alignment      47 203
Sequence analysis methods, fuzzy matching      46 61 149—151
Sequence analysis methods, Hidden Markov Model (HMM)      46—48 60 141 160 203
Sequence analysis methods, identity searching      165—166
Sequence analysis methods, iterative      49 53 55 101 140 142 145 152 154 160
Sequence analysis methods, profile      36 46—48 58—60 62 141—142 149 158—160 170—171
Sequence analysis methods, regular expression      36 46—53 55—56 58 61 141 146—151 158 170 207
Sequence analysis methods, regular expression, fuzzy      149—151
Sequence analysis methods, rule      48 149—150 170 208
Sequence Retrieval System (SRS)      26 29—31 34
Sequence Tagged Site (STS)      70—72 208
Sequence-analysis packages, Alfresco      195—197 198
Sequence-analysis packages, CINEMA      194—196 198
Sequence-analysis packages, EGCG      190—191 198
Sequence-analysis packages, EMBOSS      191 195 198
Sequence-analysis packages, GCG      198—190 191 198
Sequence-analysis packages, GeneMill      194 198
Sequence-analysis packages, Lasergene      192
Sequence-analysis packages, MacVector      193
Sequence-analysis packages, Sequencher      192
Sequence-analysis packages, Staden      191—192 198
Sequence-analysis packages, Synergy      193—194 198
Sequence-analysis packages, VectorNTI      192
sequencing      1 208
Sequencing, ambiguous base      89—92
Sequencing, assembly      87—89
Sequencing, base symbols      90—91
Sequencing, base-calling software      89—91
Sequencing, chromatogram      89—90
Sequencing, consensus      84 88—89 101—102 201
Sequencing, DNA      2 82
Sequencing, error      92
Sequencing, fluorescent      82 88—91
Sequencing, gel      89—91
Sequencing, protein      1—2
Sequencing, radioactive      88 90
Sequencing, shotgun      6 208
Serine protease      12
server      21 24—25 31—32 45 126 189 193—194 208
SIB      27 38
Sickle cell anaemia      7
Signal to noise ratio      61 118 142 154
signatures      7 48 53—54 146 151 155 183 202
Similarity      10—12 111—112
Similarity, global      119
Similarity, local      119 122 125
Splice variants      87 92 209
statistical significance      11 50 115—116 174 209
Statistical significance, diagnostic performance      49 50—51 54—56 60 111 148—149 151—152 154 201
Statistical significance, Expect (E) value      116 126
Statistical significance, false-negative      50—51 53 202
Statistical significance, false-positive      49 50—51 53 58 61 140 151 158 202
Statistical significance, probability (p) value      116 128 157 167
Statistical significance, true-negative      50 56 209
Statistical significance, true-positive      49—51 56 58 61 140 148 156 158 174 209
Structure, classification      62—64 180—181
Structure, comparison      63—64
Subsequence      45 89 110—111
Subtilisin      12
Tentative Human Concensus (THC)      98—99
The Institute for Genomic Research (TIGR)      77 96—99 101
Three-dimentional structure      xiii 3 8
Transcript map      77
Transcription      84 87 94 209
Transcriptome      77
Transferrin      98—99 166—183
Translation      31 41 43—45 72—74 81 83—84 87 94 98 166 209
Translation, conceptual      37 83 85 94 98 201
Translation, mis-translation      86
Translation, six-frame      85—86 165—166 208
Twilight Zone      10—11 114—115 142 178 209
Untranslated region (UTR)      83—84 102
UP      209
Upstream      84 87 209
Virtual tourism      31—33
Web publishing, browser      21—23 200
Web publishing, browser, graphical      22—23
Web publishing, browser, text-based      22
Web publishing, home page      21 23 24 204
Web publishing, hyperlink      24 204
Web publishing, hypermedia      24 204
Web publishing, hypertext      24 204
Web publishing, hypertext, hypertext markup language (HTML)      24 204
Web publishing, uniform resource relocator (URL)      25 165 184 209
Webservers      21 31—32 208
Webservers, BioActivity      165
Webservers, DbBrowser      29 34 55 195
Webservers, ExPASy      34 53
Webservers, proWeb      62 68
Webservers, webace      78 80
Widow      140 194 210
World Wide Web (WWW)      21 210
X-ray crystallography      207
X. laevis      166 169
Yeast      75 77
Zinc finger      205
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